1P47

Crystal Structure of tandem Zif268 molecules complexed to DNA

Structural Biology Knowledgebase: 1P47 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 1P47

Classification: Transcription / DNA

Total Structure Weight: 34859.25


Macromolecule Entities
Molecule Chains Length Organism Details
Early growth response protein 1 A, B 87 Mus musculus Fragment: residues 333-419
Gene Name(s): Egr1 Egr-1 Krox-24
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*GP*TP*GP*GP*CP*GP*TP*GP*GP*GP*CP*GP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3' C 22 synthetic
5'-D(*CP*AP*CP*GP*CP*CP*CP*AP*CP*GP*CP*CP*GP*CP*CP*CP*AP*CP*GP*CP*CP*A)-3' D 22 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.214
  • Space Group: P 31
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 70.63 α = 90.00
b = 70.63 β = 90.00
c = 99.61 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-21
  • Released Date: 2003-06-24
  • Deposition author(s): Peisach, E., Pabo, C.O.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4