1P25

Crystal structure of nickel(II)-d(GGCGCC)2

Structural Biology Knowledgebase: 1P25 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.223

Literature

Macromolecules
Sequence Display for 1P25

Classification: DNA

Total Structure Weight: 9344.60

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*GP*GP*CP*GP*CP*C)-3' A, B, C, D, E 6 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NI
Query on NI

A, B, C, D, E NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.276
  • R-Value Work: 0.223
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 68.99 α = 90.00
b = 68.99 β = 90.00
c = 56.18 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2003-04-14
  • Released Date: 2003-12-09
  • Deposition author(s): Labiuk, S.L., Delbaere, L.T., Lee, J.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4