1P1R

Horse liver alcohol dehydrogenase complexed with NADH and R-N-1-methylhexylformamide

Structural Biology Knowledgebase: 1P1R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.57 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.152

Literature

Macromolecules
Sequence Display for 1P1R

Classification: OXIDOREDUCTASE

Total Structure Weight: 163290.39

Macromolecule Entities
Molecule Chains Length Organism Details
Alcohol dehydrogenase E chain A, B, C, D 374 Equus caballus EC#: 1.1.1.1 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAI
Query on NAI

A, B, C, D 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
NADH (Synonym)
C21 H29 N7 O14 P2
BOPGDPNILDQYTO-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NMH
Query on NMH

A, B, C, D (R)-N-(1-METHYL-HEXYL)-FORMAMIDE
C8 H17 N O
GFVRKPKAQHTAQK-MRVPVSSYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MPD
Query on MPD

B (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
NMH N/A in BindingDB
Ki: 15000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.57 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.152
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 50.10 α = 90.00
b = 180.34 β = 106.36
c = 87.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-13
  • Released Date: 2003-07-15
  • Deposition author(s): Venkataramaiah, T.H., Plapp, B.V.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4