1P1M

Structure of Thermotoga maritima amidohydrolase TM0936 bound to Ni and methionine

Structural Biology Knowledgebase: 1P1M SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 1P1M

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 46032.70

Macromolecule Entities
Molecule Chains Length Organism Details
Hypothetical protein TM0936 A 406 Thermotoga maritima EC#: 3.5.4.28 IUBMB 3.5.4.31 IUBMB
Gene Name(s): mtaD TM_0936
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MET
Query on MET

A METHIONINE
C5 H11 N O2 S
FFEARJCKVFRZRR-BYPYZUCNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.201
  • Space Group: P 32 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 113.37 α = 90.00
b = 113.37 β = 90.00
c = 79.88 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-12
  • Released Date: 2003-04-29
  • Deposition author(s): Kniewel, R., Buglino, J.A., Lima, C.D., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4