1OYP

Crystal Structure of the phosphorolytic exoribonuclease RNase PH from Bacillus subtilis

Structural Biology Knowledgebase: 1OYP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.76 Å
  • R-Value Free: 0.306
  • R-Value Work: 0.285

Literature

Macromolecules
Sequence Display for 1OYP

Classification: TRANSFERASE

Total Structure Weight: 161434.34

Macromolecule Entities
Molecule Chains Length Organism Details
Ribonuclease PH A, B, C..., D, E, FA, B, C, D, E, F 245 Bacillus subtilis EC#: 2.7.7.56 IUBMB
Gene Name(s): rph BSU28370
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B, C, D, E, F SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.76 Å
  • R-Value Free: 0.306
  • R-Value Work: 0.285
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 51.31 α = 90.00
b = 163.56 β = 90.00
c = 166.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-07
  • Released Date: 2004-03-09
  • Deposition author(s): Harlow, L.S., Kadziola, A., Jensen, K.F., Larsen, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4