1OYJ

Crystal structure solution of Rice GST1 (OsGSTU1) in complex with glutathione.

Structural Biology Knowledgebase: 1OYJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 1OYJ

Classification: TRANSFERASE

Total Structure Weight: 107385.09

Macromolecule Entities
Molecule Chains Length Organism Details
glutathione s-transferase A, B, C, D 231 Oryza sativa EC#: 2.5.1.18 IUBMB
Gene Name(s): GSTU1 GST1 Os03g0785900 LOC_Os03g57200 OsJ_012308
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GSH
Query on GSH

A, B, C, D GLUTATHIONE
C10 H17 N3 O6 S
RWSXRVCMGQZWBV-WDSKDSINSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, C, D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B, C, D CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.178
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 76.83 α = 90.00
b = 91.13 β = 90.00
c = 165.03 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-04
  • Released Date: 2003-07-01
  • Deposition author(s): Dixon, D.P., McEwen, A.G., Lapthorn, A.J., Edwards, R.

Revision History

  • 2012-04-25
    Type: Biological assembly | Details: Correction biological assembly descriptions
  • 2012-04-04
    Type: Non-polymer description | Details: --
  • 2012-03-21
    Type: Non-polymer description | Details: --
  • 2011-12-21
    Type: Non-polymer description | Details: --
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4