1OWJ

Substituted 2-Naphthamidine Inhibitors of Urokinase

Structural Biology Knowledgebase: 1OWJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.344
  • R-Value Work: 0.253

Literature

Macromolecules
Sequence Display for 1OWJ

Classification: hydrolase

Total Structure Weight: 28007.13

Macromolecule Entities
Molecule Chains Length Organism Details
Urokinase-type plasminogen activator A 245 Homo sapiens EC#: 3.4.21.73 IUBMB
Fragment: residues 179-423
Gene Name(s): PLAU Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
155
Query on 155

A 6-[(Z)-AMINO(IMINO)METHYL]-N-(1-ISOPROPYL- 3,4-DIHYDROISOQUINOLIN-7-YL)-2-NAPHTHAMIDE
6-[N-(1-ISOPROPYL-3,4-DIHYDRO-7-ISOQUINOLINYL)CARBAMYL]- 2-NAPHTHALENECARBOXAMIDINE (Synonym)
C24 H24 N4 O
XRHANBWAKSYPEN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
155 Ki: 48 - 50 nM (99) BindingDB

N/A in BindingMoad
Ki: 48.0 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.344
  • R-Value Work: 0.253
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 55.16 α = 90.00
b = 53.00 β = 90.00
c = 82.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-03-28
  • Released Date: 2003-09-30
  • Deposition author(s): Wendt, M.D., Rockway, T.W., Geyer, A., McClellan, W., Weitzberg, M., Zhao, X., Mantei, R., Nienaber, V.L., Stewart, K., Klinghofer, V., Giranda, V.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4