1OWD

Substituted 2-Naphthamidine inhibitors of urokinase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.32 Å
  • R-Value Free: 0.313
  • R-Value Work: 0.269

Literature

Macromolecules
Sequence Display for 1OWD

Classification: HYDROLASE

Total Structure Weight: 27994.96

Macromolecule Entities
Molecule Chains Length Organism Details
Urokinase-type plasminogen activator A 245 Homo sapiens EC#: 3.4.21.73 IUBMB
Fragment: residues 179-423
Gene Name(s): PLAU Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
497
Query on 497

A 6-[AMINO(IMINO)METHYL]-N-[(4R)-4-ETHYL-1,2,3,4- TETRAHYDROISOQUINOLIN-6-YL]-2-NAPHTHAMIDE
2, (Synonym)
C23 H24 N4 O
LVNMYQLXKMSQTG-AWEZNQCLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
497 Ki: 6.3 nM (99) BindingDB

IC50: 6.3 nM  BindingMOAD
Ki: 6.3 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.32 Å
  • R-Value Free: 0.313
  • R-Value Work: 0.269
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 55.16 α = 90.00
b = 53.00 β = 90.00
c = 82.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-03-28
  • Released Date: 2003-09-30
  • Deposition author(s): Wendt, M.D., Rockway, T.W., Geyer, A., McClellan, W., Weitzberg, M., Zhao, X., Mantei, R., Nienaber, V.L., Stewart, K., Klinghofer, V., Giranda, V.L.

Revision History

  • Version 1_0: 2003-09-30

    Type: Initial release

  • Version 1_1: 2008-04-29

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-11

    Type: Refinement description