1OSN

Crystal structure of Varicella zoster virus thymidine kinase in complex with BVDU-MP and ADP

Structural Biology Knowledgebase: 1OSN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.235

Literature

Macromolecules
Sequence Display for 1OSN

Classification: Transferase

Total Structure Weight: 154885.83

Macromolecule Entities
Molecule Chains Length Organism Details
Thymidine kinase A, B, C, D 341 Human alphaherpesvirus 3 EC#: 2.7.1.21 IUBMB
Gene Name(s): ORF36
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B, C, D ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BVP
Query on BVP

A, B, C, D (E)-5-(2-BROMOVINYL)-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
BVDU-MP (Synonym)
C11 H14 Br N2 O8 P
LKWCVKAHHUJPQO-PIXDULNESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.2 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.235
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 99.70 α = 90.00
b = 54.20 β = 94.80
c = 167.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-03-20
  • Released Date: 2003-06-10
  • Deposition author(s): Bird, L.E., Ren, J., Wright, A., Leslie, K.D., Degreve, B., Balzarini, J., Stammers, D.K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4