1OS6

Cytochrome c7 (PpcA) from Geobacter sulfurreducens

Structural Biology Knowledgebase: 1OS6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 1OS6

Classification: ELECTRON TRANSPORT

Total Structure Weight: 10278.44

Macromolecule Entities
Molecule Chains Length Organism Details
PpcA A 71 Geobacter sulfurreducens Gene Name(s): ppcA RW64_12645
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DXC
Query on DXC

A (3ALPHA,5BETA,12ALPHA)-3,12-DIHYDROXYCHOLAN- 24-OIC ACID
DEOXYCHOLIC ACID (Synonym)
C24 H40 O4
KXGVEGMKQFWNSR-LLQZFEROSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.182
  • Space Group: P 43 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 32.40 α = 90.00
b = 32.40 β = 90.00
c = 178.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-03-18
  • Released Date: 2004-02-03
  • Deposition author(s): Pokkuluri, P.R., Londer, Y.Y., Duke, N.E.C., Long, W.C., Schiffer, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values