1ORD

CRYSTALLOGRAPHIC STRUCTURE OF A PLP-DEPENDENT ORNITHINE DECARBOXYLASE FROM LACTOBACILLUS 30A TO 3.1 ANGSTROMS RESOLUTION

Structural Biology Knowledgebase: 1ORD SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 1ORD

Classification: CARBOXY-LYASE

Total Structure Weight: 165795.03

Macromolecule Entities
Molecule Chains Length Organism Details
ORNITHINE DECARBOXYLASE A, B 730 Lactobacillus sp. 30a EC#: 4.1.1.17 IUBMB
Gene Name(s): odcI
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A, B PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.268
  • R-Value Work: 0.219
  • Space Group: P 6

Unit Cell:

Length (Å) Angle (°)
a = 195.60 α = 90.00
b = 195.60 β = 90.00
c = 97.60 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-02-08
  • Released Date: 1995-09-15
  • Deposition author(s): Hackert, M.L., Momany, C., Ernst, S., Ghosh, R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name