1OQJ

Crystal structure of the SAND domain from glucocorticoid modulatory element binding protein-1 (GMEB1)

Structural Biology Knowledgebase: 1OQJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 1OQJ

Classification: DNA BINDING PROTEIN

Total Structure Weight: 22213.10

Macromolecule Entities
Molecule Chains Length Organism Details
Glucocorticoid Modulatory Element Binding protein-1 A, B 97 Homo sapiens Fragment: SAND domain
Gene Name(s): GMEB1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.194
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 40.95 α = 90.00
b = 49.08 β = 90.00
c = 88.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-03-10
  • Released Date: 2003-11-11
  • Deposition author(s): Surdo, P.L., Bottomley, M.J., Sattler, M., Scheffzek, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4