1OPL

Structural basis for the auto-inhibition of c-Abl tyrosine kinase

Structural Biology Knowledgebase: 1OPL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.42 Å
  • R-Value Free: 0.315
  • R-Value Work: 0.306

Literature

Macromolecules
Sequence Display for 1OPL

Classification: TRANSFERASE

Total Structure Weight: 123123.55

Macromolecule Entities
Molecule Chains Length Organism Details
proto-oncogene tyrosine-protein kinase A, B 537 Homo sapiens EC#: 2.7.10.2 IUBMB
Fragment: N-terminal 531 residues (MYR-SH3-SH2-Kinase domain)
Mutation: K29R, E30D, D382N
Gene Name(s): ABL1 Gene View ABL JTK7
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P16
Query on P16

A, B 6-(2,6-DICHLOROPHENYL)-2-{[3-(HYDROXYMETHYL)PHENYL]AMINO}- 8-METHYLPYRIDO[2,3-D]PYRIMIDIN-7(8H)-ONE
PD166326 (Synonym)
C21 H16 Cl2 N4 O2
ZIQFYVPVJZEOFS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MYR
Query on MYR

A MYRISTIC ACID
C14 H28 O2
TUNFSRHWOTWDNC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
P16 IC50: 2.8 nM (99) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.42 Å
  • R-Value Free: 0.315
  • R-Value Work: 0.306
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 77.02 α = 90.00
b = 273.38 β = 90.00
c = 124.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-03-06
  • Released Date: 2003-04-08
  • Deposition author(s): Nagar, B., Hantschel, O., Young, M.A., Scheffzek, K., Veach, D., Bornmann, W., Clarkson, B., Superti-Furga, G., Kuriyan, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4