1ONK

Mistletoe lectin I from viscum album

Structural Biology Knowledgebase: 1ONK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.160

Literature

Macromolecules
Sequence Display for 1ONK

Classification: hydrolase / sugar binding protein

Total Structure Weight: 59105.09

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-galactoside specific lectin I A chain A 254 Viscum album EC#: 3.2.2.22 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Galactose specific lectin I B chain B 263 Viscum album Mutation: ΔG173
Gene Name(s):

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AZI
Query on AZI

A, B AZIDE ION
N3
IVRMZWNICZWHMI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.160
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 107.29 α = 90.00
b = 107.29 β = 90.00
c = 311.77 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-28
  • Released Date: 2004-02-28
  • Deposition author(s): Gabdoulkhakov, A.G., Savoshkina, Y., Krauspenhaar, R., Stoeva, S., Konareva, N., Kornilov, V., Kornev, A.N., Voelter, W., Nikonov, S.V., Betzel, C., Mikhailov, A.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values