1OMO

alanine dehydrogenase dimer w/bound NAD (archaeal)

Structural Biology Knowledgebase: 1OMO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.32 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.203

Literature

Macromolecules
Sequence Display for 1OMO

Classification: OXIDOREDUCTASE

Total Structure Weight: 71113.13

Macromolecule Entities
Molecule Chains Length Organism Details
alanine dehydrogenase A, B 322 Archaeoglobus fulgidus EC#: 1.4.1.1 IUBMB
Gene Name(s): ala AF_1665
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.32 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.203
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 108.70 α = 90.00
b = 55.50 β = 111.10
c = 131.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-25
  • Released Date: 2004-07-06
  • Deposition author(s): Gallagher, D.T., Smith, N.N., Holden, M.J., Schroeder, I., Monbouquette, H.G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4