1OKB

CRYSTAL STRUCTURE OF URACIL-DNA GLYCOSYLASE FROM ATLANTIC COD (GADUS MORHUA)

Structural Biology Knowledgebase: 1OKB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 1OKB

Classification: HYDROLASE

Total Structure Weight: 50831.34

Macromolecule Entities
Molecule Chains Length Organism Details
URACIL-DNA GLYCOSYLASE A, B 223 Gadus morhua EC#: 3.2.2.27 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 79-301
Mutation: P82M, A83E, G84F
Gene Name(s): ung ung1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.186
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 68.58 α = 90.00
b = 67.19 β = 119.86
c = 68.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-07-21
  • Released Date: 2004-04-05
  • Deposition author(s): Leiros, I., Moe, E., Lanes, O., Smalas, A.O., Willassen, N.P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4