1OJ8

NOVEL AND RETRO BINDING MODES IN CYTOTOXIC RIBONUCLEASES FROM RANA CATESBEIANA OF TWO CRYSTAL STRUCTURES COMPLEXED WITH D(APCPGPA) AND (2',5'CPG)

Structural Biology Knowledgebase: 1OJ8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 1OJ8

Classification: HYDROLASE

Total Structure Weight: 13577.43


Macromolecule Entities
Molecule Chains Length Organism Details
RC-RNASE6 RIBONUCLEASE A 105 Rana catesbeiana Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*AP*CP*GP*AP)-3' B 4 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PCA
Query on PCA
A L-PEPTIDE LINKING C5 H7 N O3 GLU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.229
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 61.23 α = 90.00
b = 61.23 β = 90.00
c = 65.88 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-07-07
  • Released Date: 2004-07-15
  • Deposition author(s): Tsai, C.-J., Liu, J.-H., Liao, Y.-D., Chen, L.-Y., Cheng, P.-T., Sun, Y.-J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4