1OIX

X-ray structure of the small G protein Rab11a in complex with GDP and Pi


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 1OIX

Classification: PROTEIN TRANSPORT

Total Structure Weight: 22123.19

Macromolecule Entities
Molecule Chains Length Organism Details
RAS-RELATED PROTEIN RAB-11A A 191 Homo sapiens Fragment: RESIDUES 1-173
Mutation: Q70L
Details: DELETION MUTANT LACKING THE 43 C-TERMINAL RESIDUES
Gene Name(s): RAB11A Gene View RAB11
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

A GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.201
  • Space Group: I 4 2 2

Unit Cell:

Length (Å) Angle (°)
a = 74.08 α = 90.00
b = 74.08 β = 90.00
c = 124.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-26
  • Released Date: 2005-01-25
  • Deposition author(s): Pasqualato, S., Senic-Matuglia, F., Renault, L., Goud, B., Salamero, J., Cherfils, J.

Revision History

  • 2011-05-08
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance