1OIF

Family 1 b-glucosidase from Thermotoga maritima

Structural Biology Knowledgebase: 1OIF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 1OIF

Classification: HYDROLASE

Total Structure Weight: 108176.95

Macromolecule Entities
Molecule Chains Length Organism Details
BETA-GLUCOSIDASE A, B 468 Thermotoga maritima EC#: 3.2.1.21 IUBMB
Fragment: CATALYTIC MODULE
Gene Name(s): bglA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IFM
Query on IFM

A, B 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE
4R,, (3R (Synonym)
C6 H13 N O3
QPYJXFZUIJOGNX-HSUXUTPPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
IFM N/A in BindingDB
Kd: 19 nM  BindingMOAD
Kd: 19 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.12 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.199
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 94.65 α = 90.00
b = 95.19 β = 90.00
c = 114.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-06-16
  • Released Date: 2003-11-25
  • Deposition author(s): Gloster, T., Zechel, D., Boraston, A.B., Boraston, C.M., Macdonald, J.M., Tilbrook, D.M., Stick, R.V., Davies, G.J.

Revision History

  • 2015-07-22
    Type: Secondary structure | Details: SHEET
  • 2015-07-22
    Type: Other | Details: REMARK 525
  • 2015-07-22
    Type: Version format compliance | Details: REMARK 4
  • 2015-07-22
    Type: Non-polymer description | Details: FORMUL,HETSYN
  • 2015-07-22
    Type: Biological assembly | Details: REMARK 350
  • 2015-07-22
    Type: Geometry validation | Details: REMARK 500