1OHL

YEAST 5-AMINOLAEVULINIC ACID DEHYDRATASE PUTATIVE CYCLIC REACTION INTERMEDIATE COMPLEX

Structural Biology Knowledgebase: 1OHL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 1OHL

Classification: LYASE

Total Structure Weight: 38155.25

Macromolecule Entities
Molecule Chains Length Organism Details
DELTA-AMINOLEVULINIC ACID DEHYDRATASE A 342 Saccharomyces cerevisiae EC#: 4.2.1.24 IUBMB
Details: CO-CRYSTALLISATION WITH SUBSTRATE AMINOLAEVULINIC ACID
Gene Name(s): HEM2 YGL040C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PBG
Query on PBG

A 3-[5-(AMINOMETHYL)-4-(CARBOXYMETHYL)-1H-PYRROL- 3-YL]PROPANOIC ACID
2-AMINOMETHYLPYRROL-3-ACETIC ACID 4-PROPIONIC ACID; PORPHOBILINOGEN; 5- (AMINOMETHYL)-4-(CARBOXYMETHYL)-1H-PYRROLE- 3-PROPANOIC ACID (Synonym)
C10 H14 N2 O4
QSHWIQZFGQKFMA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BME
Query on BME

A BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.188
  • Space Group: I 4 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 103.20 α = 90.00
b = 103.20 β = 90.00
c = 167.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-05-27
  • Released Date: 2003-06-02
  • Deposition author(s): Erskine, P.T., Coates, L., Butler, D., Youell, J.H., Brindley, A.A., Wood, S.P., Warren, M.J., Shoolingin-Jordan, P.M., Cooper, J.B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4