1OF3

STRUCTURAL AND THERMODYNAMIC DISSECTION OF SPECIFIC MANNAN RECOGNITION BY A CARBOHYDRATE-BINDING MODULE, TMCBM27

Structural Biology Knowledgebase: 1OF3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 1OF3

Classification: HYDROLASE / CARBOHYDRATE BINDING

Total Structure Weight: 41339.94

Macromolecule Entities
Molecule Chains Length Organism Details
BETA-MANNOSIDASE A, B 179 Thermotoga maritima Fragment: CARBOHYDRATE-BINDING MODULE, RESIDUES 505-680
Gene Name(s): manB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.188
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 69.08 α = 90.00
b = 69.08 β = 90.00
c = 229.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-07
  • Released Date: 2003-04-17
  • Deposition author(s): Boraston, A.B., Revett, T.J., Boraston, C.M., Nurizzo, D., Davies, G.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4