1OF1

KINETICS AND CRYSTAL STRUCTURE OF THE HERPES SIMPLEX VIRUS TYPE 1 THYMIDINE KINASE INTERACTING WITH (SOUTH)-METHANOCARBA-THYMIDINE

Structural Biology Knowledgebase: 1OF1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.184

Literature

Macromolecules
Sequence Display for 1OF1

Classification: TRANSFERASE

Total Structure Weight: 82733.14

Macromolecule Entities
Molecule Chains Length Organism Details
THYMIDINE KINASE A, B 376 Human alphaherpesvirus 1 EC#: 2.7.1.21 IUBMB
Gene Name(s): TK UL23
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SCT
Query on SCT

A, B (SOUTH)-METHANOCARBA-THYMIDINE
C12 H16 N2 O4
XRMLXZVSFIBRRJ-PEFMBERDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
SCT N/A in BindingDB
IC50: 15000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.184
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 113.73 α = 90.00
b = 118.01 β = 90.00
c = 108.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-04-03
  • Released Date: 2004-06-03
  • Deposition author(s): Claus, M.T., Schelling, P., Folkers, G., Marquez, V.E., Scapozza, L., Schulz, G.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4