1OE3

ATOMIC RESOLUTION STRUCTURE OF 'HALF APO' NIR

Structural Biology Knowledgebase: 1OE3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Observed: 0.116

Literature

Macromolecules
Sequence Display for 1OE3

Classification: REDUCTASE

Total Structure Weight: 37069.36

Macromolecule Entities
Molecule Chains Length Organism Details
DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE A 336 Achromobacter xylosoxidans Details: LOSS OF T1 AND T2 CU
Gene Name(s): nir nirK ERS451415_02178
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PG4
Query on PG4

A TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CU
Query on CU

A COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PCA
Query on PCA
A L-PEPTIDE LINKING C5 H7 N O3 GLU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Observed: 0.116
  • Space Group: P 63

Unit Cell:

Length (Å) Angle (°)
a = 79.24 α = 90.00
b = 79.24 β = 90.00
c = 99.68 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-03-18
  • Released Date: 2004-07-21
  • Deposition author(s): Ellis, M.J., Dodd, F.E., Sawers, G., Eady, R.R., Hasnain, S.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4