1ODN

ISOPENICILLIN N SYNTHASE FROM ASPERGILLUS NIDULANS (OXYGEN-EXPOSED PRODUCT FROM ANAEROBIC AC-VINYLGLYCINE FE COMPLEX)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.151

Literature

Macromolecules
Sequence Display for 1ODN

Classification: OXIDOREDUCTASE

Total Structure Weight: 38077.11

Macromolecule Entities
Molecule Chains Length Organism Details
ISOPENICILLIN N SYNTHASE A 331 Aspergillus nidulans EC#: 1.21.3.1 IUBMB
Gene Name(s): ipnA ips AN2622
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
APV
Query on APV

A 6-(5-AMINO-5-CARBOXY-PENTANOYLAMINO)-3-HYDROXYMETHYL- 7-OXO-4-THIA-1-AZA-BICYCLO[3.2.0]HEPTANE- 2-CARBOXYLIC ACID
ALPHA-HYDROXYMETHYL-BETA-DEMETHYL-ISOPENICILLIN N (Synonym)
C13 H19 N3 O7 S
ONQGMOJLKCORAC-DANLAGSESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE2
Query on FE2

A FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.151
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 46.74 α = 90.00
b = 70.97 β = 90.00
c = 101.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-19
  • Released Date: 2003-06-19
  • Deposition author(s): Elkins, J.M., Rutledge, P.J., Burzlaff, N.I., Clifton, I.J., Adlington, R.M., Roach, P.L., Baldwin, J.E.

Revision History

  • Version 1_0: 2003-06-19

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Version format compliance

  • Version 1_2: 2017-07-05

    Type: Refinement description