1ODB

THE CRYSTAL STRUCTURE OF HUMAN S100A12 - COPPER COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.19 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 1ODB

Classification: METAL BINDING PROTEIN

Total Structure Weight: 65621.48

Macromolecule Entities
Molecule Chains Length Organism Details
CALGRANULIN C A, B, C..., D, E, FA, B, C, D, E, F 95 Homo sapiens Details: CA2+ AND CU2+ BOUND FORM
Gene Name(s): S100A12 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CU
Query on CU

A, B, C, D, E, F COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, C, D, E, F CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.19 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.186
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 70.57 α = 90.00
b = 118.96 β = 90.00
c = 90.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-15
  • Released Date: 2003-06-12
  • Deposition author(s): Moroz, O.V., Antson, A.A., Grist, S.J., Maitland, N.J., Dodson, G.G., Wilson, K.S., Lukanidin, E.M., Bronstein, I.B.

Revision History

  • Version 1_0: 2003-06-12

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Advisory, Refinement description, Version format compliance