1OD5

Crystal structure of glycinin A3B4 subunit homohexamer

Structural Biology Knowledgebase: 1OD5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 1OD5

Classification: GLOBULIN

Total Structure Weight: 111383.59

Macromolecule Entities
Molecule Chains Length Organism Details
GLYCININ A, B 492 Glycine max Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CO3
Query on CO3

A, B CARBONATE ION
C O3
BVKZGUZCCUSVTD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.201
  • Space Group: H 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 114.84 α = 90.00
b = 114.84 β = 90.00
c = 191.57 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-13
  • Released Date: 2003-06-02
  • Deposition author(s): Adachi, M., Kanamori, J., Masuda, T., Yagasaki, K., Kitamura, K., Mikami, B., Utsumi, S.

Revision History

  • 2015-06-10
    Type: Non-polymer description | Details: FORMUL
  • 2015-06-10
    Type: Sequence database correspondence | Details: DBREF
  • 2015-06-10
    Type: Version format compliance | Details: REMARK 4
  • 2015-06-10
    Type: Secondary structure | Details: SHEET
  • 2015-06-10
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2015-06-10
    Type: Other | Details: REMARK 280