1OBY

CRYSTAL STRUCTURE OF THE COMPLEX OF PDZ2 OF SYNTENIN WITH A SYNDECAN-4 PEPTIDE.

Structural Biology Knowledgebase: 1OBY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.175

Literature

Macromolecules
Sequence Display for 1OBY

Classification: CELL ADHESION

Total Structure Weight: 18565.02

Macromolecule Entities
Molecule Chains Length Organism Details
SYNTENIN 1 A, B 79 Homo sapiens Fragment: PDZ2, RESIDUES 197-270
Gene Name(s): SDCBP Gene View MDA9 SYCL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
SYNDECAN-4 P, Q 6 Homo sapiens Fragment: LAST 6 RESIDUES, RESIDUES 193-198
Gene Name(s): SDC4 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.175
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 58.34 α = 90.00
b = 54.44 β = 98.65
c = 50.22 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-31
  • Released Date: 2003-07-11
  • Deposition author(s): Kang, B.S., Cooper, D.R., Devedjiev, Y., Derewenda, U., Derewenda, Z.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4