1OBY

Crystal structure of the complex of PDZ2 of syntenin with a syndecan-4 peptide.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.175

Literature

Macromolecules
Sequence Display for 1OBY

Classification: CELL ADHESION

Total Structure Weight: 18564.91

Macromolecule Entities
Molecule Chains Length Organism Details
SYNTENIN 1 A, B 79 Homo sapiens Fragment: PDZ2, RESIDUES 197-270
Gene Name(s): SDCBP Gene View MDA9 SYCL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
SYNDECAN-4 P, Q 6 Homo sapiens Fragment: LAST 6 RESIDUES, RESIDUES 193-198
Gene Name(s): SDC4 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.175
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 58.34 α = 90.00
b = 54.44 β = 98.65
c = 50.22 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-31
  • Released Date: 2003-07-11
  • Deposition author(s): Kang, B.S., Cooper, D.R., Devedjiev, Y., Derewenda, U., Derewenda, Z.S.

Revision History

  • Version 1_0: 2003-07-11

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance