1OBX

CRYSTAL STRUCTURE OF THE COMPLEX OF PDZ2 OF SYNTENIN WITH AN INTERLEUKIN 5 RECEPTOR ALPHA PEPTIDE.

Structural Biology Knowledgebase: 1OBX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 1OBX

Classification: CELL ADHESION

Total Structure Weight: 9643.62

Macromolecule Entities
Molecule Chains Length Organism Details
SYNTENIN 1 A 79 Homo sapiens Fragment: PDZ2, RESIDUES 197-270
Gene Name(s): SDCBP Gene View MDA9 SYCL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
INTERLEUKIN 5 RECEPTOR ALPHA B 8 Homo sapiens Fragment: LAST 8 RESIDUES, RESIDUES 413-420
Gene Name(s): IL5RA Gene View IL5R
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CO
Query on CO

A COBALT (II) ION
Co
XLJKHNWPARRRJB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.35 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.176
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.72 α = 90.00
b = 55.98 β = 90.00
c = 51.09 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-31
  • Released Date: 2003-07-10
  • Deposition author(s): Kang, B.S., Cooper, D.R., Devedjiev, Y., Derewenda, U., Derewenda, Z.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4