1OAX

Fv Structure of the IgE SPE-7 in complex with acenaphthenequinone

Structural Biology Knowledgebase: 1OAX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.67 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.238

Literature

Macromolecules
Sequence Display for 1OAX

Classification: IMMUNE SYSTEM

Total Structure Weight: 101342.29

Macromolecule Entities
Molecule Chains Length Organism Details
IMMUNOGLOBULIN E H, I, J, K 122 Mus musculus Fragment: FV REGION, RESIDUES 1-122
Gene Name(s): Ighv1-72 Gm16709
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
IMMUNOGLOBULIN E L, M, N, O 110 Mus musculus Fragment: FV REGION, RESIDUES 1-110
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANQ
Query on ANQ

H, J ACENAPHTHENEQUINONE
C12 H6 O2
AFPRJLBZLPBTPZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.67 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.238
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 78.73 α = 90.00
b = 78.64 β = 90.00
c = 167.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-21
  • Released Date: 2004-01-15
  • Deposition author(s): James, L.C., Roversi, P., Tawfik, D.

Revision History

  • 2013-10-30
    Type: Other | Details: REMARK 525
  • 2013-10-30
    Type: Version format compliance | Details: REMARK 4
  • 2013-10-30
    Type: Source and taxonomy | Details: SOURCE
  • 2013-10-30
    Type: Biological assembly | Details: REMARK 350