1O94

Ternary complex between trimethylamine dehydrogenase and electron transferring flavoprotein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.172

Literature

Macromolecules
Sequence Display for 1O94

Classification: ELECTRON TRANSPORT

Total Structure Weight: 291482.44

Macromolecule Entities
Molecule Chains Length Organism Details
TRIMETHYLAMINE DEHYDROGENASE A, B 729 Methylophilus methylotrophus EC#: 1.5.8.2 IUBMB
Details: LINK BETWEEN FMN AND RESIDUE 30
Gene Name(s): tmd
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT C, E 264 Methylophilus methylotrophus Gene Name(s): etfB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT D, F 320 Methylophilus methylotrophus Gene Name(s): etfA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A, B FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SF4
Query on SF4

A, B IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AMP
Query on AMP

C, E ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.172
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 118.93 α = 90.00
b = 211.54 β = 100.03
c = 125.97 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-11
  • Released Date: 2003-02-06
  • Deposition author(s): Leys, D., Basran, J., Talfournier, F., Sutcliffe, M.J., Scrutton, N.S.

Revision History

  • 2013-09-18
    Type: Derived calculations, Non-polymer description, Other, Version format compliance