1O8C

CRYSTAL STRUCTURE OF E. COLI K-12 YHDH WITH BOUND NADPH

Structural Biology Knowledgebase: 1O8C SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 1O8C

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 152160.88

Macromolecule Entities
Molecule Chains Length Organism Details
YHDH A, B, C, D 345 Escherichia coli EC#: 1.3.1.84 IUBMB
Gene Name(s): acuI yhdH b3253 JW3222
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NDP
Query on NDP

A, B, C, D NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.171
  • Space Group: P 61
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 189.31 α = 90.00
b = 189.31 β = 90.00
c = 98.65 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-11-26
  • Released Date: 2004-05-21
  • Deposition author(s): Sulzenbacher, G., Roig-Zamboni, V., Pagot, F., Grisel, S., Salamoni, A., Valencia, C., Bignon, C., Vincentelli, R., Tegoni, M., Cambillau, C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4