1O6Y

Catalytic domain of PknB kinase from Mycobacterium tuberculosis

Structural Biology Knowledgebase: 1O6Y SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 1O6Y

Classification: TRANSFERASE

Total Structure Weight: 33012.56

Macromolecule Entities
Molecule Chains Length Organism Details
SERINE/THREONINE-PROTEIN KINASE PKNB A 299 Mycobacterium tuberculosis EC#: 2.7.11.1 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 1-279
Gene Name(s): pknB Rv0014c MTCY10H4.14c
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACP
Query on ACP

A PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE (Synonym)
C11 H18 N5 O12 P3
UFZTZBNSLXELAL-IOSLPCCCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.191
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 114.61 α = 90.00
b = 122.09 β = 90.00
c = 46.97 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-10-21
  • Released Date: 2003-01-30
  • Deposition author(s): Ortiz-Lombardia, M., Pompeo, F., Boitel, B., Alzari, P.M., TB Structural Genomics Consortium (TB)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor