1O5D

Dissecting and Designing Inhibitor Selectivity Determinants at the S1 site Using an Artificial Ala190 Protease (Ala190 uPA)

Structural Biology Knowledgebase: 1O5D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 1O5D

Classification: BLOOD CLOTTING hydrolase

Total Structure Weight: 70272.57

Macromolecule Entities
Molecule Chains Length Organism Details
Coagulation factor VII L 152 Homo sapiens EC#: 3.4.21.21 IUBMB
Fragment: light chain
Gene Name(s): F7 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Coagulation factor VII H 254 Homo sapiens EC#: 3.4.21.21 IUBMB
Fragment: heavy chain (catalytic domain)
Gene Name(s): F7 Gene View
Tissue factor T 218 Homo sapiens Gene Name(s): F3 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CR9
Query on CR9

H 2-{5-[AMINO(IMINIO)METHYL]-6-FLUORO-1H-BENZIMIDAZOL- 2-YL}-6-[(2-METHYLCYCLOHEXYL)OXY]BENZENOLATE
CRA_11092 (Synonym)
C21 H23 F N4 O2
CMCDWLMEDRBWIR-GTNSWQLSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.226
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 78.54 α = 90.00
b = 69.03 β = 89.99
c = 79.12 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-09-09
  • Released Date: 2004-09-21
  • Deposition author(s): Katz, B.A., Luong, C., Ho, J.D., Somoza, J.R., Gjerstad, E., Tang, J., Williams, S.R., Verner, E., Mackman, R.L., Young, W.B., Sprengeler, P.A., Chan, H., Mortara, K., Janc, J.W., McGrath, M.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4