1O1S

Structure of FPT bound to isoprenoid analog 3b

Structural Biology Knowledgebase: 1O1S SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Observed: 0.190

Literature

Macromolecules
Sequence Display for 1O1S

Classification: TRANSFERASE

Total Structure Weight: 92708.48

Macromolecule Entities
Molecule Chains Length Organism Details
Protein farnesyltransferase alpha subunit A 380 Rattus norvegicus EC#: 2.5.1.58 IUBMB 2.5.1.59 IUBMB
Mutation: I156T
Gene Name(s): Fnta
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Protein farnesyltransferase beta subunit B 427 Rattus norvegicus EC#: 2.5.1.58 IUBMB
Fragment: residue 1-427
Gene Name(s): Fntb
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1NH
Query on 1NH

B (2E,6E)-8-[(3-BENZOYLBENZYL)OXY]-3,7-DIMETHYLOCTA- 2,6-DIENYL TRIHYDROGEN DIPHOSPHATE
C24 H30 O9 P2
IRMXEEMZDGNJKM-APFDVHGWSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1NH N/A in BindingDB
Ki: 49 nM  BindingMOAD
Ki: 49 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Observed: 0.190
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 171.83 α = 90.00
b = 171.83 β = 90.00
c = 69.09 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-14
  • Released Date: 2003-05-06
  • Deposition author(s): Turek-Etienne, T.C., Strickland, C.L., Distefano, M.D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4