1O0N

Ribonuclease A in complex with uridine-3'-phosphate

Structural Biology Knowledgebase: 1O0N SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.220

Literature

Macromolecules
Sequence Display for 1O0N

Classification: hydrolase

Total Structure Weight: 28065.16

Macromolecule Entities
Molecule Chains Length Organism Details
Ribonuclease pancreatic A, B 124 Bos taurus EC#: 3.1.27.5 IUBMB
Gene Name(s): RNASE1 Gene View RNS1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
U3P
Query on U3P

A, B 3'-URIDINEMONOPHOSPHATE
C9 H13 N2 O9 P
FOGRQMPFHUHIGU-XVFCMESISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
U3P Ki: 78500 - 82000 nM (100) BindingDB

Ki: 82000 nM  BindingMOAD
Ki: 82000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.241
  • R-Value Work: 0.220
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 99.96 α = 90.00
b = 32.89 β = 90.28
c = 72.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-24
  • Released Date: 2003-12-09
  • Deposition author(s): Leonidas, D.D., Oikonomakos, N.G., Chrysina, E.D., Kosmopoulou, M.N., Vlassi, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4