1O06

Crystal structure of the Vps27p Ubiquitin Interacting Motif (UIM)

Structural Biology Knowledgebase: 1O06 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 1O06

Classification: TRANSPORT PROTEIN

Total Structure Weight: 2441.51

Macromolecule Entities
Molecule Chains Length Organism Details
Vacuolar protein sorting-associated protein VPS27 A 20 Saccharomyces cerevisiae Fragment: Residues 301-320
Gene Name(s): VPS27 DID7 GRD11 SSV17 VPL23 VPT27 YNR006W N2038
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.185
  • Space Group: P 62 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 34.97 α = 90.00
b = 34.97 β = 90.00
c = 64.24 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-20
  • Released Date: 2003-07-22
  • Deposition author(s): Fisher, R.D., Wang, B., Alam, S.L., Higginson, D.S., Rich, R., Myszka, D., Sundquist, W.I., Hill, C.P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values