1NZO

The crystal structure of wild type penicillin-binding protein 5 from E. coli

Structural Biology Knowledgebase: 1NZO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 1NZO

Classification: HYDROLASE

Total Structure Weight: 39997.77

Macromolecule Entities
Molecule Chains Length Organism Details
Penicillin-binding protein 5 A 363 Escherichia coli EC#: 3.4.16.4 IUBMB
Gene Name(s): dacA pfv b0632 JW0627
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BME
Query on BME

A BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.208
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 109.35 α = 90.00
b = 50.28 β = 120.90
c = 84.53 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-19
  • Released Date: 2004-01-13
  • Deposition author(s): Nicholas, R.A., Krings, S., Tomberg, J., Nicola, G., Davies, C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4