1NZC

The high resolution structures of RmlC from Streptococcus suis in complex with dTDP-D-xylose


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.164

Literature

Macromolecules
Sequence Display for 1NZC

Classification: ISOMERASE

Total Structure Weight: 92208.61

Macromolecule Entities
Molecule Chains Length Organism Details
dTDP-6-deoxy-D-xylo-4-hexulose 3,5-epimerase A, B, C, D 197 Streptococcus suis EC#: 5.1.3.13 IUBMB
Gene Name(s): rmlC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TDX
Query on TDX

A, B, C, D THYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE
C15 H24 N2 O15 P2
AJUADKZRQSBUAK-KDGZBOQCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

B, C NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.164
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 50.85 α = 90.00
b = 140.87 β = 92.72
c = 53.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-17
  • Released Date: 2003-06-24
  • Deposition author(s): Dong, C., Major, L.L., Allen, A., Blankenfeldt, W., Maskell, D., Naismith, J.H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4