1NXJ

Structure of Rv3853 from Mycobacterium tuberculosis

Structural Biology Knowledgebase: 1NXJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 1NXJ

Classification: UNKNOWN FUNCTION

Total Structure Weight: 58815.06

Macromolecule Entities
Molecule Chains Length Organism Details
Probable S-adenosylmethionine:2-demethylmenaquinone methyltransferase A, B, C 183 Mycobacterium tuberculosis EC#: 2.1 IUBMB
Gene Name(s): rraA Rv3853 MTCY01A6.15c
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TLA
Query on TLA

A, B, C L(+)-TARTARIC ACID
C4 H6 O6
FEWJPZIEWOKRBE-JCYAYHJZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLV
Query on GLV

A, B, C GLYOXYLIC ACID
GLYOXALATE, GLYOXYLATE (Synonym)
C2 H2 O3
HHLFWLYXYJOTON-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.190
  • Space Group: P 63
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 102.46 α = 90.00
b = 102.46 β = 90.00
c = 117.49 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-10
  • Released Date: 2003-07-29
  • Deposition author(s): Johnston, J.M., Arcus, V.L., Baker, E.N., TB Structural Genomics Consortium (TBSGC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4