1NVT

Crystal structure of Shikimate Dehydrogenase (AROE or MJ1084) in complex with NADP+

Structural Biology Knowledgebase: 1NVT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.224

Literature

Macromolecules
Sequence Display for 1NVT

Classification: oxidoreductase

Total Structure Weight: 64273.11

Macromolecule Entities
Molecule Chains Length Organism Details
Shikimate 5'-dehydrogenase A, B 287 Methanocaldococcus jannaschii EC#: 1.1.1.25 IUBMB
Gene Name(s): aroE MJ1084
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A, B NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.224
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 74.65 α = 90.00
b = 75.62 β = 90.00
c = 118.79 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-02-04
  • Released Date: 2003-03-25
  • Deposition author(s): Padyana, A.K., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4