1NTE

CRYSTAL STRUCTURE ANALYSIS OF THE SECOND PDZ DOMAIN OF SYNTENIN


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.24 Å
  • R-Value Free: 0.153
  • R-Value Work: 0.113

Literature

Macromolecules
Sequence Display for 1NTE

Classification: SIGNALING PROTEIN

Total Structure Weight: 8725.96

Macromolecule Entities
Molecule Chains Length Organism Details
Syntenin 1 A 82 Homo sapiens Fragment: PDZ 2
Gene Name(s): SDCBP Gene View MDA9 SYCL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
O
Query on O

A OXYGEN ATOM
O
XLYOFNOQVPJJNP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.24 Å
  • R-Value Free: 0.153
  • R-Value Work: 0.113
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 25.29 α = 90.00
b = 42.57 β = 108.71
c = 31.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-29
  • Released Date: 2003-07-15
  • Deposition author(s): Kang, B.S., Cooper, D.R., Devedjiev, Y., Derewenda, U., Derewenda, Z.S.

Revision History

  • 2008-04-29
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance
  • 2012-05-02
    Type: Database references, Structure summary