1NOM

DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7), 31-KD DOMAIN; SOAKED IN THE PRESENCE OF MNCL2 (5 MILLIMOLAR)

Structural Biology Knowledgebase: 1NOM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Observed: 0.184

Literature

Macromolecules
Sequence Display for 1NOM

Classification: NUCLEOTIDYLTRANSFERASE

Total Structure Weight: 28829.68

Macromolecule Entities
Molecule Chains Length Organism Details
DNA POLYMERASE BETA A 248 Rattus norvegicus EC#: 2.7.7.7 IUBMB 4.2.99 IUBMB
Fragment: C-TERMINAL 31-KD DOMAIN (RESIDUES 88 - 335)
Details: SOAKED IN THE PRESENCE OF MNCL2 (5 MILLIMOLAR)
Gene Name(s): Polb
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Observed: 0.184
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 120.18 α = 90.00
b = 62.88 β = 90.00
c = 38.29 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-04-19
  • Released Date: 1996-11-15
  • Deposition author(s): Pelletier, H., Sawaya, M.R.

Revision History

  • 2011-11-16
    Type: Atom occupancy | Details: Atom occupancy
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4