1NOL

OXYGENATED HEMOCYANIN (SUBUNIT TYPE II)

Structural Biology Knowledgebase: 1NOL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Observed: 0.181

Literature

Macromolecules
Sequence Display for 1NOL

Classification: OXYGEN TRANSPORT

Total Structure Weight: 73019.62

Macromolecule Entities
Molecule Chains Length Organism Details
HEMOCYANIN (SUBUNIT TYPE II) A 628 Limulus polyphemus Mutation: V9I
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CU
Query on CU

A COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NO3
Query on NO3

A NITRATE ION
N O3
NHNBFGGVMKEFGY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PER
Query on PER

A PEROXIDE ION
O2
ANAIPYUSIMHBEL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Observed: 0.181
  • Space Group: R 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 117.00 α = 60.02
b = 117.00 β = 60.02
c = 117.00 γ = 60.02

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-10-17
  • Released Date: 1996-03-08
  • Deposition author(s): Hazes, B., Hol, W.G.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4