1NO3

REFINED STRUCTURE OF SOYBEAN LIPOXYGENASE-3 WITH 4-NITROCATECHOL AT 2.15 ANGSTROM RESOLUTION

Structural Biology Knowledgebase: 1NO3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 1NO3

Classification: OXIDOREDUCTASE

Total Structure Weight: 97130.80

Macromolecule Entities
Molecule Chains Length Organism Details
Lipoxygenase-3 A 857 Glycine max EC#: 1.13.11.58 IUBMB
Gene Name(s): LOX1.3 LOX3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: MONOTOPIC MEMBRANE PROTEINS

Subgroup Name: Lipoxygenases

Protein Name: Lipoxygenase-L3 from soybeans


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
4NC
Query on 4NC

A 4-NITROCATECHOL
C6 H5 N O4
XJNPNXSISMKQEX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.186
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 112.90 α = 90.00
b = 137.53 β = 95.48
c = 61.88 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-15
  • Released Date: 2003-06-03
  • Deposition author(s): Skrzypczak-Jankun, E., Borbulevych, O.Y., Jankun, J.
  • Previous versions: 1BYT

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor