1NL4

Crystal Structure of Rat Farnesyl Transferase in Complex With A Potent Biphenyl Inhibitor

Structural Biology Knowledgebase: 1NL4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 1NL4

Classification: TRANSFERASE

Total Structure Weight: 83341.74

Macromolecule Entities
Molecule Chains Length Organism Details
Protein farnesyltransferase alpha subunit A 312 Rattus norvegicus EC#: 2.5.1.58 IUBMB 2.5.1.59 IUBMB
Fragment: residue 55-366
Mutation: I156T
Gene Name(s): Fnta
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Protein farnesyltransferase beta subunit B 401 Rattus norvegicus EC#: 2.5.1.58 IUBMB
Fragment: residue 23-423
Gene Name(s): Fntb
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FTL
Query on FTL

B 4-[(3-CYANO-BENZYL)-(3-METHYL-3H-IMIDAZOL- 4-YLMETHYL)-AMINO]-2-NAPHTHALEN-1-YL-BENZONITRILE
C30 H23 N5
IQZCODLAPFPVNS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HFP
Query on HFP

B ALPHA-HYDROXYFARNESYLPHOSPHONIC ACID
C15 H33 O4 P
IJNCEETVCWDDQB-KFWWJZLASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
FTL N/A in BindingDB
N/A in BindingMoad
IC50: 0.39 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.283
  • R-Value Work: 0.229
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 168.62 α = 90.00
b = 168.62 β = 90.00
c = 69.12 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-06
  • Released Date: 2003-02-11
  • Deposition author(s): Curtin, M.L., Florjancic, A.S., Cohen, J., Gu, W.-J., Frost, D.J., Muchmore, S.W., Sham, H.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4