1NL0

Crystal structure of human factor IX Gla domain in complex of an inhibitory antibody, 10C12


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.233

Literature

Macromolecules
Sequence Display for 1NL0

Classification: IMMUNE SYSTEM

Total Structure Weight: 53886.30

Macromolecule Entities
Molecule Chains Length Organism Details
anti-factor IX antibody, 10C12, chain L L 213 Homo sapiens
anti-factor IX antibody, 10C12, chain H H 224 Homo sapiens
factor IX G 51 Homo sapiens EC#: 3.4.21.22 IUBMB
Fragment: Gla domain
Mutation: E7X, E8X, E15X, E17X, E20X, E21X, E26X, E27X, E30X, E33X, E36X, E40X
Gene Name(s): F9 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

L SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

G CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CGU
Query on CGU
G L-PEPTIDE LINKING C6 H9 N O6 GLU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.233
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 105.09 α = 90.00
b = 71.61 β = 119.14
c = 90.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-06
  • Released Date: 2004-01-20
  • Deposition author(s): Huang, M., Furie, B.C., Furie, B.

Revision History

  • Version 1_0: 2004-01-20

    Type: Initial release

  • Version 1_1: 2008-04-29

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance