1NJU

Complex structure of HCMV Protease and a peptidomimetic inhibitor

Structural Biology Knowledgebase: 1NJU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.223

Literature

Macromolecules
Sequence Display for 1NJU

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 115394.73

Macromolecule Entities
Molecule Chains Length Organism Details
Assemblin A, B, C, D 256 Human herpesvirus 5 EC#: 3.4.21.97 IUBMB
Mutation: A143Q
Gene Name(s): UL80 APNG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0FP
Query on 0FP

A, B, C, D N-(6-aminohexanoyl)-3-methyl-L-valyl-3-methyl- L-valyl-N~1~-[(2S,3S)-3-hydroxy-4-oxo-4-{[(1R)- 1-phenylpropyl]amino}butan-2-yl]-N~4~,N~4~- dimethyl-L-aspartamide
BILC 408 (Synonym)
C37 H63 N7 O7
RICYNZHPHSJRNO-GYZAPQSVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.223
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 105.46 α = 90.00
b = 213.53 β = 90.00
c = 52.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-02
  • Released Date: 2003-02-11
  • Deposition author(s): Khayat, R., Batra, R., Qian, C., Halmos, T., Bailey, M., Tong, L.

Revision History

  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-13
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-13
    Type: Source and taxonomy | Details: update source
  • 2011-07-13
    Type: Linkage | Details: Linkage