1NJU

Complex structure of HCMV Protease and a peptidomimetic inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.223

Literature

Macromolecules
Sequence Display for 1NJU

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 115393.95

Macromolecule Entities
Molecule Chains Length Organism Details
Assemblin A, B, C, D 256 Human betaherpesvirus 5 EC#: 3.4.21.97 IUBMB
Mutation: A143Q
Gene Name(s): UL80 APNG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0FP
Query on 0FP

A, B, C, D N-(6-aminohexanoyl)-3-methyl-L-valyl-3-methyl- L-valyl-N~1~-[(2S,3S)-3-hydroxy-4-oxo-4-{[(1R)- 1-phenylpropyl]amino}butan-2-yl]-N~4~,N~4~- dimethyl-L-aspartamide
BILC 408 (Synonym)
C37 H63 N7 O7
RICYNZHPHSJRNO-GYZAPQSVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.223
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 105.46 α = 90.00
b = 213.53 β = 90.00
c = 52.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-02
  • Released Date: 2003-02-11
  • Deposition author(s): Khayat, R., Batra, R., Qian, C., Halmos, T., Bailey, M., Tong, L.

Revision History

  • Version 1_0: 2003-02-11

    Type: Initial release

  • Version 1_1: 2008-04-29

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Source and taxonomy, Structure summary, Version format compliance

  • Version 1_3: 2012-12-12

    Type: Other