1NJT

COMPLEX STRUCTURE OF HCMV PROTEASE AND A PEPTIDOMIMETIC INHIBITOR

Structural Biology Knowledgebase: 1NJT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.228

Literature

Macromolecules
Sequence Display for 1NJT

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 114871.01

Macromolecule Entities
Molecule Chains Length Organism Details
Capsid protein P40 A, B, C, D 256 Human herpesvirus 5 EC#: 3.4.21.97 IUBMB
Fragment: Assemblin
Mutation: A143Q
Gene Name(s): UL80 APNG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Peptidomimetic Inhibitor E, F, G, H 6 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A, B, C, D CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.228
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 107.07 α = 90.00
b = 213.31 β = 90.00
c = 52.79 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2003-01-02
  • Released Date: 2003-02-11
  • Deposition author(s): Khayat, R., Batra, R., Qian, C., Halmos, T., Bailey, M., Tong, L.

Revision History

  • 2013-02-27
    Type: Other | Details: Add PRD info
  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-13
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-13
    Type: Linkage | Details: Linkage
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4