1NJP

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Structural Biology Knowledgebase: 1NJP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.244

Literature

Macromolecules
Sequence Display for 1NJP

Classification: RIBOSOME

Total Structure Weight: 986339.94


Macromolecule Entities
Molecule Chains Length Organism Details
50S ribosomal protein L16 K 141 Deinococcus radiodurans Gene Name(s): rplP DR_0318
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
GENERAL STRESS PROTEIN CTC T 237 Deinococcus radiodurans Gene Name(s): rplY ctc DR_0427
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
23S ribosomal RNA 0 2880 Deinococcus radiodurans
tRNA acceptor stem mimic 5 35 synthetic

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PPU
Query on PPU
5 RNA LINKING C22 H30 N7 O8 P A

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.244
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 169.90 α = 90.00
b = 409.90 β = 90.00
c = 695.90 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2003-01-02
  • Released Date: 2003-02-11
  • Deposition author(s): Bashan, A., Agmon, I., Zarivatch, R., Schluenzen, F., Harms, J.M., Berisio, R., Bartels, H., Hansen, H.A., Yonath, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4