1NJH

Crystal Structure of Bacillus subtilis YojF protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.220

Literature

Macromolecules
Sequence Display for 1NJH

Classification: STRUCTURAL GENOMICS UNKNOWN FUNCTION

Total Structure Weight: 13625.01

Macromolecule Entities
Molecule Chains Length Organism Details
protein yojF A 119 Bacillus subtilis Mutation: M1M, M41M, M94M
Gene Name(s): yojF BSU19470
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IPA
Query on IPA

A ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.220
  • Space Group: P 3 2 1

Unit Cell:

Length (Å) Angle (°)
a = 78.70 α = 90.00
b = 78.70 β = 90.00
c = 31.07 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-12-31
  • Released Date: 2003-07-01
  • Deposition author(s): Kim, Y., Korolev, O., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • Version 1_0: 2003-07-01

    Type: Initial release

  • Version 1_1: 2008-04-29

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Version format compliance